IL_4V88_346

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

4V88|1|A5|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_346 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.275

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4V88|1|A5|G|2714
4V88|1|A5|A|2715
4V88|1|A5|U|2716
*
4V88|1|A5|A|2740
4V88|1|A5|C|2741

Current chains

Chain A5

25S rRNA

Nearby chains

Chain Db

60S ribosomal protein L29

Chain Do

60S ribosomal protein L42-A