IL_4V88_353

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

4V88|1|A5|U|2835
4V88|1|A5|C|2836
4V88|1|A5|A|2837
4V88|1|A5|A|2838
4V88|1|A5|G|2839
*
4V88|1|A5|C|2849
4V88|1|A5|G|2850
4V88|1|A5|A|2851
4V88|1|A5|C|2852
4V88|1|A5|A|2853

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DI

60S ribosomal protein L10

Chain Dm

60S ribosomal protein L40