IL_4V88_364

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

4V88|1|A5|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78007.1

Basepair signature

cWW-tHH-L-L-cWW

Number of instances in this motif group

6

Unit IDs

4V88|1|A5|U|3047
4V88|1|A5|A|3048
4V88|1|A5|A|3049
4V88|1|A5|U|3050
4V88|1|A5|U|3051
*
4V88|1|A5|A|3091
4V88|1|A5|C|3092
4V88|1|A5|C|3093
4V88|1|A5|A|3094

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain DV

60S ribosomal protein L23-A

Chain DW

60S ribosomal protein L24-A