IL_4V88_367

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4V88|1|A5|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V88|1|A5|A|3103
4V88|1|A5|U|3104
4V88|1|A5|U|3105
4V88|1|A5|A|3106
4V88|1|A5|U|3107
*
4V88|1|A5|A|3127
4V88|1|A5|G|3128
4V88|1|A5|A|3129
4V88|1|A5|A|3130
4V88|1|A5|U|3131

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DH

60S ribosomal protein L9-A

Chain DO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain Dm

60S ribosomal protein L40