IL_4V88_373

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

4V88|1|A5|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61930.1

Basepair signature

cWW-L-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A5|C|3225
4V88|1|A5|A|3226
4V88|1|A5|A|3227
4V88|1|A5|C|3228
4V88|1|A5|G|3229
*
4V88|1|A5|U|3258
4V88|1|A5|U|3259
4V88|1|A5|G|3260

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DE

60S ribosomal protein L6-A

Chain DM

60S ribosomal protein L14-A

Chain DO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain Df

60S ribosomal protein L33-A