IL_4V88_380

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79493.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

7

Unit IDs

4V88|1|A5|U|3332
4V88|1|A5|G|3333
4V88|1|A5|U|3334
4V88|1|A5|A|3335
4V88|1|A5|A|3336
4V88|1|A5|G|3337
*
4V88|1|A5|C|3367
4V88|1|A5|U|3368
4V88|1|A5|G|3369
4V88|1|A5|A|3370
4V88|1|A5|G|3371

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain DW

60S ribosomal protein L24-A