IL_4V88_386

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

4V88|1|A6|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

4V88|1|A6|U|37
4V88|1|A6|C|38
4V88|1|A6|A|39
4V88|1|A6|A|40
4V88|1|A6|A|41
*
4V88|1|A6|U|466
4V88|1|A6|G|467
4V88|1|A6|A|468
4V88|1|A6|C|469
4V88|1|A6|A|470
4V88|1|A6|A|471

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CJ

40S ribosomal protein S9-A

Chain CY

40S ribosomal protein S24-A