IL_4V88_404

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

4V88|1|A6|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V88|1|A6|G|363
4V88|1|A6|G|364
4V88|1|A6|G|365
*
4V88|1|A6|C|376
4V88|1|A6|G|377
4V88|1|A6|A|378
4V88|1|A6|U|379
4V88|1|A6|U|380
4V88|1|A6|C|381

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CJ

40S ribosomal protein S9-A

Chain CX

40S ribosomal protein S23-A