IL_4V88_409

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

4V88|1|A6|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V88|1|A6|A|481
4V88|1|A6|U|482
*
4V88|1|A6|A|505
4V88|1|A6|A|506
4V88|1|A6|U|507

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CJ

40S ribosomal protein S9-A

Chain Ce

40S ribosomal protein S30-A