IL_4V88_413

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

4V88|1|A6|A|550
4V88|1|A6|G|551
4V88|1|A6|G|552
4V88|1|A6|G|553
4V88|1|A6|C|554
4V88|1|A6|A|555
4V88|1|A6|A|556
4V88|1|A6|G|557
*
4V88|1|A6|C|587
4V88|1|A6|U|588

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain CJ

40S ribosomal protein S9-A

Chain Ce

40S ribosomal protein S30-A