IL_4V88_421

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V88|1|A6|G|703
4V88|1|A6|C|704
4V88|1|A6|U|705
4V88|1|A6|A|706
4V88|1|A6|A|707
4V88|1|A6|C|708
*
4V88|1|A6|G|730
4V88|1|A6|C|731
4V88|1|A6|G|732
4V88|1|A6|A|733
4V88|1|A6|A|734
4V88|1|A6|C|735

Current chains

Chain A6

18S rRNA

Nearby chains