IL_4V88_423

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

4V88|1|A6|A|746
4V88|1|A6|C|747
*
4V88|1|A6|G|802
4V88|1|A6|A|803
4V88|1|A6|A|804
4V88|1|A6|U|805

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CH

40S ribosomal protein S7-A

Chain CL

40S ribosomal protein S11-A

Chain CW

40S ribosomal protein S22-A

Chain CX

40S ribosomal protein S23-A