IL_4V88_440

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V88|1|A6|G|1111
4V88|1|A6|G|1112
4V88|1|A6|A|1113
4V88|1|A6|G|1114
4V88|1|A6|U|1115
4V88|1|A6|A|1116
4V88|1|A6|U|1117
4V88|1|A6|G|1118
*
4V88|1|A6|U|1129
4V88|1|A6|G|1130
4V88|1|A6|A|1131
4V88|1|A6|A|1132
4V88|1|A6|A|1133
4V88|1|A6|C|1134

Current chains

Chain A6

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CX

40S ribosomal protein S23-A

Chain Dn

60S ribosomal protein L41-A