IL_4V88_452

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V88|1|A6|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V88|1|A6|C|1280
4V88|1|A6|G|1281
*
4V88|1|A6|C|1426
4V88|1|A6|A|1427
4V88|1|A6|G|1428

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain CD

40S ribosomal protein S3

Chain CQ

40S ribosomal protein S16-A

Chain CU

40S ribosomal protein S20

Chain Cd

40S ribosomal protein S29-A