IL_4V88_453

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

4V88|1|A6|U|1290
4V88|1|A6|G|1291
4V88|1|A6|G|1292
*
4V88|1|A6|C|1323
4V88|1|A6|G|1324
4V88|1|A6|A|1325

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CA

40S ribosomal protein S0-A

Chain CC

40S ribosomal protein S2

Chain CR

40S ribosomal protein S17-A