IL_4V88_461

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V88|1|A6|C|1495
4V88|1|A6|U|1496
4V88|1|A6|U|1497
4V88|1|A6|G|1498
*
4V88|1|A6|C|1509
4V88|1|A6|U|1510
4V88|1|A6|U|1511
4V88|1|A6|G|1512

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CT

40S ribosomal protein S19-A