IL_4V88_469

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

4V88|1|A6|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V88|1|A6|U|1656
4V88|1|A6|U|1657
4V88|1|A6|G|1658
*
4V88|1|A6|U|1743
4V88|1|A6|A|1744

Current chains

Chain A6

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CX

40S ribosomal protein S23-A

Chain DV

60S ribosomal protein L23-A

Chain Dn

60S ribosomal protein L41-A