IL_4V88_472

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V88|1|A6|G|1672
4V88|1|A6|G|1673
4V88|1|A6|C|1674
*
4V88|1|A6|G|1727
4V88|1|A6|A|1728
4V88|1|A6|C|1729

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CG

40S ribosomal protein S6-A

Chain CI

40S ribosomal protein S8-A

Chain DW

60S ribosomal protein L24-A