IL_4V88_473

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V88|1|A6|C|1675
4V88|1|A6|U|1676
4V88|1|A6|C|1677
4V88|1|A6|A|1678
*
4V88|1|A6|U|1723
4V88|1|A6|U|1724
4V88|1|A6|U|1725
4V88|1|A6|G|1726

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CG

40S ribosomal protein S6-A

Chain CI

40S ribosomal protein S8-A

Chain DW

60S ribosomal protein L24-A