IL_4V88_478
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_478 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.0483
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A7|G|21
4V88|1|A7|A|22
4V88|1|A7|A|23
4V88|1|A7|A|24
4V88|1|A7|G|25
4V88|1|A7|C|26
4V88|1|A7|A|27
*
4V88|1|A7|U|53
4V88|1|A7|U|54
4V88|1|A7|A|55
4V88|1|A7|A|56
4V88|1|A7|G|57
4V88|1|A7|C|58
Current chains
- Chain A7
- 5S rRNA
Nearby chains
- Chain DD
- 60S ribosomal protein L5
- Chain DJ
- 60S ribosomal protein L11-A
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