IL_4V88_484
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35203.1
- Basepair signature
- cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A8|A|44
4V88|1|A8|C|45
4V88|1|A8|G|46
4V88|1|A8|C|47
4V88|1|A8|A|48
4V88|1|A8|G|49
4V88|1|A8|C|50
4V88|1|A8|G|51
4V88|1|A8|A|52
4V88|1|A8|A|53
4V88|1|A8|A|54
4V88|1|A8|U|55
4V88|1|A8|G|56
4V88|1|A8|C|57
4V88|1|A8|G|58
4V88|1|A8|A|59
4V88|1|A8|U|60
4V88|1|A8|A|61
4V88|1|A8|C|62
4V88|1|A8|G|63
4V88|1|A8|U|64
*
4V88|1|A8|A|96
4V88|1|A8|A|97
4V88|1|A8|U|98
4V88|1|A8|C|99
4V88|1|A8|U|100
Current chains
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain DX
- 60S ribosomal protein L25
- Chain Dh
- 60S ribosomal protein L35-A
- Chain Dj
- 60S ribosomal protein L37-A
- Chain Dl
- 60S ribosomal protein L39
Coloring options: