IL_4V88_491
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_491 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0548
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V88|1|A1|C|2889
4V88|1|A1|A|2890
4V88|1|A1|U|2891
4V88|1|A1|A|2892
*
4V88|1|A1|U|2909
4V88|1|A1|A|2910
4V88|1|A1|A|2911
4V88|1|A1|G|2912
4V88|1|A1|C|2913
4V88|1|A1|G|2914
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein L3
- Chain BH
- 60S ribosomal protein L9-A
- Chain BO
- 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
- Chain BV
- 60S ribosomal protein L23-A
- Chain Bm
- 60S ribosomal protein L40
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