IL_4V88_498

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

4V88|1|A5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_498 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.3526

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V88|1|A5|C|977
4V88|1|A5|G|978
4V88|1|A5|U|979
4V88|1|A5|A|980
4V88|1|A5|U|981
*
4V88|1|A5|A|1102
4V88|1|A5|A|1103
4V88|1|A5|G|1104

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DF

60S ribosomal protein L7-A

Chain DQ

60S ribosomal protein L18-A

Chain Db

60S ribosomal protein L29