IL_4V88_517

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_517 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.1954

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V88|1|A5|U|177
4V88|1|A5|U|178
*
4V88|1|A5|A|238
4V88|1|A5|G|239
4V88|1|A5|U|240
4V88|1|A5|G|241

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain DL

60S ribosomal protein L13-A

Chain Dh

60S ribosomal protein L35-A

Chain Dj

60S ribosomal protein L37-A