IL_4V88_523

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_523 not in the Motif Atlas

Homologous match to IL_8P9A_401

Geometric discrepancy: 0.1436

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4V88|1|A2|A|518
4V88|1|A2|C|519
4V88|1|A2|A|520
*
4V88|1|A2|U|532
4V88|1|A2|U|533

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A