IL_4V89_023

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_023 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1586

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V89|1|AA|U|409
4V89|1|AA|G|410
4V89|1|AA|A|411
4V89|1|AA|A|412
4V89|1|AA|G|413
4V89|1|AA|A|414
4V89|1|AA|A|415
4V89|1|AA|G|416
*
4V89|1|AA|U|427
4V89|1|AA|G|428
4V89|1|AA|U|429
4V89|1|AA|A|430
4V89|1|AA|A|431
4V89|1|AA|A|432
4V89|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4