IL_4V89_069

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_069 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.076

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V89|1|BA|G|24
4V89|1|BA|U|25
4V89|1|BA|G|26
4V89|1|BA|G|27
4V89|1|BA|A|28
4V89|1|BA|U|29
4V89|1|BA|G|30
*
4V89|1|BA|C|510
4V89|1|BA|U|511
4V89|1|BA|G|512
4V89|1|BA|A|513
4V89|1|BA|A|514
4V89|1|BA|A|515
4V89|1|BA|C|516

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L32

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22