IL_4V89_078

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_078 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.227

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V89|1|BA|C|269
4V89|1|BA|A|270
4V89|1|BA|G|271
*
4V89|1|BA|C|366
4V89|1|BA|G|367
4V89|1|BA|A|368
4V89|1|BA|U|369
4V89|1|BA|G|370

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28