IL_4V89_082

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_082 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.0999

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V89|1|BA|G|536
4V89|1|BA|G|537
4V89|1|BA|A|538
4V89|1|BA|G|539
*
4V89|1|BA|U|554
4V89|1|BA|G|555
4V89|1|BA|A|556
4V89|1|BA|C|557

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20