IL_4V89_120

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

4V89|1|BA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_120 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1145

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V89|1|BA|C|1417
4V89|1|BA|G|1418
4V89|1|BA|A|1419
4V89|1|BA|A|1420
4V89|1|BA|G|1421
*
4V89|1|BA|C|1577
4V89|1|BA|U|1578
4V89|1|BA|A|1579
4V89|1|BA|A|1580
4V89|1|BA|G|1581

Current chains

Chain BA

23S rRNA

Nearby chains