IL_4V89_159

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

4V89|1|BA|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_159 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2515

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4V89|1|BA|A|2459
4V89|1|BA|U|2460
4V89|1|BA|A|2461
*
4V89|1|BA|U|2489
4V89|1|BA|G|2490
4V89|1|BA|U|2491
4V89|1|BA|U|2492
4V89|1|BA|U|2493

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L16