3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCCCCAAG*CG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8A_037 not in the Motif Atlas
Geometric match to IL_7RQB_037
Geometric discrepancy: 0.0741
The information below is about IL_7RQB_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_15861.7
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

4V8A|1|AA|C|1004
4V8A|1|AA|C|1005
4V8A|1|AA|C|1006
4V8A|1|AA|C|1007
4V8A|1|AA|C|1008
4V8A|1|AA|A|1009
4V8A|1|AA|A|1010
4V8A|1|AA|G|1011
*
4V8A|1|AA|C|1150
4V8A|1|AA|G|1151

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain AN
50S ribosomal protein L13
Chain AU
50S ribosomal protein L20
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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