IL_4V8A_067

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4V8A|1|AA|G|1801, 4V8A|1|AA|G|1816, 4V8A|1|AA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_067 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0661

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V8A|1|AA|U|1798
4V8A|1|AA|G|1799
4V8A|1|AA|C|1800
4V8A|1|AA|G|1801
4V8A|1|AA|A|1802
4V8A|1|AA|A|1803
4V8A|1|AA|C|1804
*
4V8A|1|AA|G|1813
4V8A|1|AA|G|1814
4V8A|1|AA|A|1815
4V8A|1|AA|G|1816
4V8A|1|AA|G|1817
4V8A|1|AA|U|1818
4V8A|1|AA|A|1819
4V8A|1|AA|U|1820
4V8A|1|AA|A|1821

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA