IL_4V8A_091

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4V8A|1|AA|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_091 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.0844

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4V8A|1|AA|A|2459
4V8A|1|AA|U|2460
4V8A|1|AA|C|2461
*
4V8A|1|AA|G|2489
4V8A|1|AA|G|2490
4V8A|1|AA|U|2491
4V8A|1|AA|U|2492
4V8A|1|AA|U|2493

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L16