IL_4V8A_110

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCC*GGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_110 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3945

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4V8A|1|AB|C|30
4V8A|1|AB|C|31
4V8A|1|AB|C|32
*
4V8A|1|AB|G|50
4V8A|1|AB|G|51
4V8A|1|AB|A|52
4V8A|1|AB|A|53
4V8A|1|AB|G|54

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L5

Chain AS

50S ribosomal protein L18