IL_4V8A_169

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_169 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0874

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V8A|1|BA|A|1469
4V8A|1|BA|G|1470
4V8A|1|BA|A|1471
4V8A|1|BA|A|1472
4V8A|1|BA|G|1473
*
4V8A|1|BA|U|1518
4V8A|1|BA|G|1519
4V8A|1|BA|G|1520
4V8A|1|BA|U|1523

Current chains

Chain BA

23S ribosomal RNA

Nearby chains