IL_4V8A_206

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_206 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.1036

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V8A|1|BA|C|2507
4V8A|1|BA|G|2508
*
4V8A|1|BA|U|2580
4V8A|1|BA|G|2581
4V8A|1|BA|G|2582

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3