IL_4V8A_241

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_241 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1081

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V8A|1|CA|G|409
4V8A|1|CA|G|410
4V8A|1|CA|A|411
4V8A|1|CA|A|412
4V8A|1|CA|G|413
4V8A|1|CA|A|414
4V8A|1|CA|A|415
4V8A|1|CA|G|416
*
4V8A|1|CA|U|427
4V8A|1|CA|G|428
4V8A|1|CA|U|429
4V8A|1|CA|A|430
4V8A|1|CA|A|431
4V8A|1|CA|A|432
4V8A|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4