IL_4V8A_256

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_256 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0789

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V8A|1|CA|C|779
4V8A|1|CA|A|780
4V8A|1|CA|A|781
4V8A|1|CA|A|782
4V8A|1|CA|C|783
*
4V8A|1|CA|G|799
4V8A|1|CA|G|800
4V8A|1|CA|U|801
4V8A|1|CA|A|802
4V8A|1|CA|G|803

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L2

Chain CK

30S ribosomal protein S11