3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8A_279 not in the Motif Atlas
Geometric match to IL_5MWI_007
Geometric discrepancy: 0.1333
The information below is about IL_5MWI_007
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
259

Unit IDs

4V8A|1|CA|G|1405
4V8A|1|CA|U|1406
4V8A|1|CA|C|1407
*
4V8A|1|CA|G|1494
4V8A|1|CA|U|1495
4V8A|1|CA|C|1496

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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