IL_4V8A_283

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_283 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.1293

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8A|1|CA|C|1431
4V8A|1|CA|G|1432
4V8A|1|CA|A|1433
4V8A|1|CA|A|1434
4V8A|1|CA|G|1435
*
4V8A|1|CA|C|1466
4V8A|1|CA|G|1467
4V8A|1|CA|A|1468
4V8A|1|CA|G|1469

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S ribosomal protein L19

Chain CT

30S ribosomal protein S20