IL_4V8A_300

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_300 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0949

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8A|1|DA|G|292
4V8A|1|DA|G|293
*
4V8A|1|DA|U|304
4V8A|1|DA|G|305
4V8A|1|DA|G|306
4V8A|1|DA|C|307
4V8A|1|DA|C|308

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16