IL_4V8A_327

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACC*GGGUGCCCCGCGAGGGGAGCC

Length

27 nucleotides

Bulged bases

4V8A|1|DA|C|1030|||B

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|DA|G|1002
4V8A|1|DA|G|1003
4V8A|1|DA|A|1004
4V8A|1|DA|A|1005
4V8A|1|DA|C|1006
4V8A|1|DA|C|1007
*
4V8A|1|DA|G|1022
4V8A|1|DA|G|1023
4V8A|1|DA|G|1024
4V8A|1|DA|U|1025
4V8A|1|DA|G|1026
4V8A|1|DA|C|1027
4V8A|1|DA|C|1028
4V8A|1|DA|C|1029
4V8A|1|DA|C|1030
4V8A|1|DA|G|1030|||A
4V8A|1|DA|C|1030|||B
4V8A|1|DA|G|1030|||C
4V8A|1|DA|A|1030|||D
4V8A|1|DA|G|1031
4V8A|1|DA|G|1032
4V8A|1|DA|G|1033
4V8A|1|DA|G|1034
4V8A|1|DA|A|1035
4V8A|1|DA|G|1036
4V8A|1|DA|C|1037
4V8A|1|DA|C|1038

Current chains

Chain DA

16S ribosomal RNA

Nearby chains