IL_4V8A_347
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 4V8A|1|DA|G|1442|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8A_347 not in the Motif Atlas
- Homologous match to IL_6CZR_172
- Geometric discrepancy: 0.4133
- The information below is about IL_6CZR_172
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_97255.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V8A|1|DA|C|1440
4V8A|1|DA|G|1441
4V8A|1|DA|G|1442
4V8A|1|DA|G|1442|||A
4V8A|1|DA|A|1442|||B
4V8A|1|DA|G|1443
*
4V8A|1|DA|C|1459
4V8A|1|DA|A|1460
4V8A|1|DA|G|1461
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AT
- 50S ribosomal protein L19
- Chain DT
- 30S ribosomal protein S20
Coloring options: