IL_4V8A_349

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8A_349 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.065

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V8A|1|AA|G|1666
4V8A|1|AA|G|1667
4V8A|1|AA|A|1668
4V8A|1|AA|A|1669
4V8A|1|AA|C|1670
4V8A|1|AA|U|1671
4V8A|1|AA|C|1672
4V8A|1|AA|U|1673
4V8A|1|AA|G|1674
*
4V8A|1|AA|C|1990
4V8A|1|AA|U|1991
4V8A|1|AA|G|1992
4V8A|1|AA|U|1993
4V8A|1|AA|C|1994

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AO

50S ribosomal protein L14