IL_4V8B_004

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8B_004 not in the Motif Atlas

Homologous match to IL_5J7L_004

Geometric discrepancy: 0.0647

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8B|1|AA|C|54
4V8B|1|AA|A|55
4V8B|1|AA|U|56
*
4V8B|1|AA|A|356
4V8B|1|AA|G|357

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S RIBOSOMAL PROTEIN S20

Chain DK

50S ribosomal protein L9