3D structure

PDB id
4V8B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8B_198 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1431
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62329.1
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4V8B|1|CA|G|409
4V8B|1|CA|G|410
4V8B|1|CA|A|411
4V8B|1|CA|A|412
4V8B|1|CA|G|413
4V8B|1|CA|A|414
4V8B|1|CA|A|415
4V8B|1|CA|G|416
*
4V8B|1|CA|U|427
4V8B|1|CA|G|428
4V8B|1|CA|U|429
4V8B|1|CA|A|430
4V8B|1|CA|A|431
4V8B|1|CA|A|432
4V8B|1|CA|C|433

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CG
30S RIBOSOMAL PROTEIN S4

Coloring options:


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