IL_4V8B_334

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8B_334 not in the Motif Atlas

Geometric match to IL_4PCJ_001

Geometric discrepancy: 0.2153

The information below is about IL_4PCJ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V8B|1|DA|C|2108
4V8B|1|DA|U|2109
4V8B|1|DA|G|2110
*
4V8B|1|DA|C|2179
4V8B|1|DA|U|2180
4V8B|1|DA|G|2181

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CD

Transfer RNA; tRNA