IL_4V8B_345

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8B_345 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1696

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4V8B|1|DA|C|2466
4V8B|1|DA|C|2467
4V8B|1|DA|G|2468
4V8B|1|DA|A|2469
4V8B|1|DA|G|2470
*
4V8B|1|DA|C|2480
4V8B|1|DA|G|2481
4V8B|1|DA|G|2482
4V8B|1|DA|C|2483
4V8B|1|DA|G|2484

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain DP

50S ribosomal protein L16