Loop IL_4V8B

3D structure

PDB id: 4V8B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: GGUGGAGCAGCCCGGUAGCUCGUC*GAAGGUCGUCGGUUCAAAUCCGGCCC
Length: 50 nucleotides
Bulged bases: 4V8B|1|AD|C|16, 4V8B|1|AD|C|17, 4V8B|1|AD|C|18, 4V8B|1|AD|U|21, 4V8B|1|AD|U|48
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8B|1|AD|G|6
4V8B|1|AD|G|7
4V8B|1|AD|U|8
4V8B|1|AD|G|9
4V8B|1|AD|G|10
4V8B|1|AD|A|11
4V8B|1|AD|G|12
4V8B|1|AD|C|13
4V8B|1|AD|A|14
4V8B|1|AD|G|15
4V8B|1|AD|C|16
4V8B|1|AD|C|17
4V8B|1|AD|C|18
4V8B|1|AD|G|19
4V8B|1|AD|G|20
4V8B|1|AD|U|21
4V8B|1|AD|A|22
4V8B|1|AD|G|23
4V8B|1|AD|C|24
4V8B|1|AD|U|25
4V8B|1|AD|C|26
4V8B|1|AD|G|27
4V8B|1|AD|U|28
4V8B|1|AD|C|29
*
4V8B|1|AD|G|43
4V8B|1|AD|A|44
4V8B|1|AD|A|45
4V8B|1|AD|G|46
4V8B|1|AD|G|47
4V8B|1|AD|U|48
4V8B|1|AD|C|49
4V8B|1|AD|G|50
4V8B|1|AD|U|51
4V8B|1|AD|C|52
4V8B|1|AD|G|53
4V8B|1|AD|G|54
4V8B|1|AD|U|55
4V8B|1|AD|U|56
4V8B|1|AD|C|57
4V8B|1|AD|A|58
4V8B|1|AD|A|59
4V8B|1|AD|A|60
4V8B|1|AD|U|61
4V8B|1|AD|C|62
4V8B|1|AD|C|63
4V8B|1|AD|G|64
4V8B|1|AD|G|65
4V8B|1|AD|C|66
4V8B|1|AD|C|67
4V8B|1|AD|C|68

Current chains

Chain AD: TRNA-FMET

Nearby chains

Chain AJ: 30S RIBOSOMAL PROTEIN S7
Chain AN: 30S RIBOSOMAL PROTEIN S11
Chain B6: 50S ribosomal protein L33
Chain BA: Large subunit ribosomal RNA; LSU rRNA

IL_4V8B_371